Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015952386.1_cds_XP_016492071.1_82319
CDS Infomation

[gene=LOC107811616] [db_xref=GeneID:107811616] [protein=RNA pseudouridine synthase 2, chloroplastic-like] [protein_id=XP_016492071.1] [location=join(18404..18724,18817..18960,19780..20040,20166..20368,23016..23094,23638..23813,23901..24003,24089..24097)] [gbkey=CDS]
Sequence

ATGCTAGCACTGAACTCAACATCAATCTTTGTGCCCCCACAAAACCCAAAACCCTTTTCT
TTTAGTAGGGTTTCAAGCTTCATTTTCAGAGCATTTTCCAAGTTCCCCGGAGACTCAGAT
TCCGACGACTCACCGGGTGAAATTACCGGCCGGAGGTCCAATTACTCCGGCGTTAAGCTC
GAAGAAACAGTAGATGTTAAAACTGGAAAGCTGAGACTAGATTCTTGGGTCAGCTCCCGT
ATCAACGGTATTAGCAGAGCTCGTGTTCAGTCCAGCATTCGCTCTGGCCTTGTTTCTGTC
AATGGTCGCGTCACTGATAAGGTTTCACATACGGTAAAAGGTGGGGATAAGGTTAATTGT
ACAATAGCTGATTTGAAGCCTTTAAGAGCTGAACCAGAGGATATACCATTGGATATAGTG
TATGAAGATGACCATGTGCTTGTTGTTAACAAGCCTGCTCACATGGTAGTCCATCCGGCG
CCAGGAAATGCTACTGGAACGCTTGTAAGCGGAATCCTTCATCACTGCAGTCTTCCCACT
GTTTCATTCCCGGGTGAGGAAGTTCTTTCTGATGTGGAGGATGATTCTCATGATGAGTTG
AACTTGTTTTCCACCGATCAAAGTCCTTATGGTGTCGATTCTTCTGTTGTATGTGAGCCA
TCTGTTCGACCTGGAATTGTGCATAGGTTAGACAAAGGAACAAGTGGATTGCTTGTTGTA
GCGAAGACTGAGCAGTCTCTTGCCAATCTAGCCGAGCAGTTTAAGAAACATACCATAAAA
AGAGTCTATGTCAGCATTACTTGTGGAGTACCTACATCAGTTTCAGGACGCATTGATATC
CCAATTGGCCGTGATTCAAATAACCGCATCCGTATGATTGCTATTCCTGGATCACATAAA
GGTGGAAGAGCCCGTAATGCTGCCAGTAGGTATAAAGTAATTGAAAAACTTGCTGGAGGT
GGCTCCGCATTGGTTGAATGGAGGTTAGAAACTGGGCGCACTCATCAGATACGTGCTCAT
GCGAAGTACCTAGGTATACCTCTTTTGGGTGATGAGGTGTATGGAGGTACTAAGAACATG
GCCCTTTCGCTTCTTCAGCCTAAAACACATCCAAGGTCTCATGGGAAACTTTCGCAGTTG
ATTTCTGGAATTGAAAGACCTTGCCTCCATGCTTTAACCCTTGGATTTAGGCATCCATAC
ACTGGCGAGAACATACACTTCACTCGGTTGCCTCCTGCTGATTTTGCTGAGGTTTTAAGC
GAGCTTCGTGCCATTAGCACTGAAAAGGTCTTATGA

Peptide Sequence

PEP ID

XP_016492071.1
PEP Infomation

PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Nicotiana tabacum]
Sequence

MLALNSTSIFVPPQNPKPFSFSRVSSFIFRAFSKFPGDSDSDDSPGEITGRRSNYSGVKL
EETVDVKTGKLRLDSWVSSRINGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNC
TIADLKPLRAEPEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPT
VSFPGEEVLSDVEDDSHDELNLFSTDQSPYGVDSSVVCEPSVRPGIVHRLDKGTSGLLVV
AKTEQSLANLAEQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMIAIPGSHK
GGRARNAASRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNM
ALSLLQPKTHPRSHGKLSQLISGIERPCLHALTLGFRHPYTGENIHFTRLPPADFAEVLS
ELRAISTEKVL

Transcript Sequence

Gene sequence data has not been registered.